This REPOSITORY contains the data used for the main figures of the manuscript.

Data for main figures:

1. Fig1:
-Fig1a: Cumulative number of Covid-19 confirmed cases and deaths until the 30th of April 2020, as provided by the Brazilian ministry of Health at https://covid.saude.gov.br/;
-Fig1b: number of Covid-19 confirmed cases and deaths until the 30th of April 2020, as provided by the Brazilian ministry of Health at https://covid.saude.gov.br/;
-Fig1c: reproduction number (Rt) estimates and confidence intervals for São Paulo city.
-Fig1d: reproduction number (Rt) estimates and confidence intervals for Rio de Janeiro city.

2. Fig2:
-Fig2a: Dates of first confirmed Covid-19 case and death for each Brazilian state. Dates and states of collection of all 427 sequences generated in this study.
-Fig2b: Number of SARI Covid-19 confirmed cases and number of novel genomes generated in this study per Brazilian state.
-Fig3c: Number of samples per lag time (in days) between symptom onset and collection date.

3. Fig3:
-Fig3a: Maximum Clade Credibility (MCC)  tree of 1,182 SARS-CoV-2 genomes, including 427 novel genomes for Brazil. For details, see supplementary data.
-Fig3b: 
-Fig3c: Number of national and international air passengers in Brazil per flight and per day from January to 30th April 2020.

4. Fig4:
-Fig4a: Continuous phylogeography
-Fig4b: Discrete phylogeography
-Fig4c: Average distance of air travel in Brazil


